About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_22231017_22233126_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22231017 - 22233126
Intron Length:
2110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTGAC
5'SS Class:
major
3'SS Sequence:
TTCCCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CTTTCCTTCCCC
Flanking Amino Acid:
EEGSEAAAASGTVLFMGRVM
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.2
66.9
39.2
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
87.3
0.84
0.7
80
32
Minor 5ss
37.5
-1.4
3.4
52.1
45.1
Minor BPS
45.8
-0.3
3.6
73.88
43.5

Associated Gene:

Gene:
SERPINI1
Ensembl Gene ID:
ENSAPLG00000013347
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046039
22230940 - 22251368
20429