About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_2223379_2223529_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2223379 - 2223529
Intron Length:
151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTC|GTGAGTTGA
5'SS Class:
major
3'SS Sequence:
TTTATTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTTGCTTTACCT
Flanking Amino Acid:
CEKQSNDTFHSFIGTCFALF
Intron Amino Acid Position:
575

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.6
0.39
1.3
63.7
39
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
92.5
0.96
0.7
88.4
28.6
Minor 5ss
35.6
-1.6
2.8
40.7
40.1
Minor BPS
69.3
0.69
1.7
87.23
39

Associated Gene:

Gene:
TRPC1
Ensembl Gene ID:
ENSAPLG00000002664
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002748
2221401 - 2241659
20259