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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_2223709_2227439_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2223709 - 2227439
Intron Length:
3731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATATC
5'SS Class:
strong_major
3'SS Sequence:
ATCTATTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TTTTACTAAAAC
Flanking Amino Acid:
TTSSILGPLQISMGQMLQDF
Intron Amino Acid Position:
516

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.8
83.7
27.2
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
82.6
0.73
0.8
76.2
36.9
Minor 5ss
34.2
-1.8
2.9
44.9
43.2
Minor BPS
60.2
0.3
2
76.85
38.8

Associated Gene:

Gene:
TRPC1
Ensembl Gene ID:
ENSAPLG00000002664
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002748
2221401 - 2241659
20259