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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_22239263_22245044_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22239263 - 22245044
Intron Length:
5782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TTACGTTCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
ATTTTTGCAATT
Flanking Amino Acid:
KKQKVEVYLPRFTVEQEIDL
Intron Amino Acid Position:
301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.7
85.9
23.8
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
78.4
0.64
0.9
69.7
41.3
Minor 5ss
31.6
-2.1
3
39.7
45.8
Minor BPS
48.8
-0
2.1
73.56
38.2

Associated Gene:

Gene:
SERPINI1
Ensembl Gene ID:
ENSAPLG00000013347
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013939
22230940 - 22265790
34851
ENSAPLT00000046039
22230940 - 22251368
20429
ENSAPLT00000040691
22230879 - 22274536
43658