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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_22245250_22246332_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22245250 - 22246332
Intron Length:
1083

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TACTACTGATAG
Flanking Amino Acid:
MMYQQGEFYYGEFSDGSNEA
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
67.5
40.3
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
82.4
0.73
0.8
77.7
31
Minor 5ss
34.3
-1.8
2.8
37.3
42.5
Minor BPS
43.2
-0.6
1.9
48.1
44.4

Associated Gene:

Gene:
SERPINI1
Ensembl Gene ID:
ENSAPLG00000013347
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046039
22230940 - 22251368
20429
ENSAPLT00000040691
22230879 - 22274536
43658
ENSAPLT00000013939
22230940 - 22265790
34851