About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_22246528_22249096_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22246528 - 22249096
Intron Length:
2569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTCCA
5'SS Class:
major
3'SS Sequence:
TTTTTCTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAC
U12 Branch Point Sequence:
TTGACATGCAGA
Flanking Amino Acid:
INKWVENHTNNMIKDFVSSR
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
67.1
38.2
Major BPS
77.7
0.69
0.9
69.1
37.9
Major PPT
88.6
0.87
0.6
89
20.1
Minor 5ss
36.4
-1.5
2.9
44.4
37.9
Minor BPS
40
-0.8
2.3
54.11
44

Associated Gene:

Gene:
SERPINI1
Ensembl Gene ID:
ENSAPLG00000013347
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013939
22230940 - 22265790
34851
ENSAPLT00000046039
22230940 - 22251368
20429
ENSAPLT00000040691
22230879 - 22274536
43658