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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_22249328_22251100_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22249328 - 22251100
Intron Length:
1773

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TCTCACCGAACT
Flanking Amino Acid:
HSLGFDSLKNGDEFTFLKDL
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.73
1
68.8
41.8
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
88.9
0.88
0.6
88.5
21
Minor 5ss
33.5
-1.9
3.4
45.9
43.3
Minor BPS
48.7
-0
2
72.7
43.2

Associated Gene:

Gene:
SERPINI1
Ensembl Gene ID:
ENSAPLG00000013347
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013939
22230940 - 22265790
34851
ENSAPLT00000046039
22230940 - 22251368
20429
ENSAPLT00000040691
22230879 - 22274536
43658