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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_22251369_22265787_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22251369 - 22265787
Intron Length:
14419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCATCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTAACTTATTT
Flanking Amino Acid:
MILKSYNMYFL
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.8
35.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
86.6
0.82
0.7
81.1
30.5
Minor 5ss
35.2
-1.7
2.7
39.5
40.9
Minor BPS
56.4
0.28
1.8
76.4
40.1

Associated Gene:

Gene:
SERPINI1
Ensembl Gene ID:
ENSAPLG00000013347
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013939
22230940 - 22265790
34851