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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_2227584_2229386_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2227584 - 2229386
Intron Length:
1803

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
TTTTACATTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTCTTTTTACAT
Flanking Amino Acid:
FALKVVAHNKFHDYAERKDW
Intron Amino Acid Position:
468

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
84.4
0.77
0.8
78.5
34.3
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
57.9
0.33
1.7
75.95
41.3

Associated Gene:

Gene:
TRPC1
Ensembl Gene ID:
ENSAPLG00000002664
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002748
2221401 - 2241659
20259