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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_22279980_22280769_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22279980 - 22280769
Intron Length:
790

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTCT
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTATTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TCAGTCTAAACT
Flanking Amino Acid:
YAVMYPVFNELERVNLSAAQ
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
81.4
33.4
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
83.5
0.75
0.8
77.9
34.4
Minor 5ss
46.5
-0.4
2.8
65.7
45.4
Minor BPS
56.2
0.27
1.8
71.66
45.5

Associated Gene:

Gene:
PDCD10
Ensembl Gene ID:
ENSAPLG00000013679
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014286
22274937 - 22284703
9767