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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_22280824_22281798_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22280824 - 22281798
Intron Length:
975

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCAATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
GCATCTTTAAGA
Flanking Amino Acid:
AQTLRAAFIKAEKENPGLTQ
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.6
33.8
Major BPS
84.6
0.86
1
74
41.2
Major PPT
76
0.58
0.9
70.6
33.7
Minor 5ss
29.7
-2.3
3
40.4
45.3
Minor BPS
60.8
0.33
1.7
64.51
42.1

Associated Gene:

Gene:
PDCD10
Ensembl Gene ID:
ENSAPLG00000013679
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014286
22274937 - 22284703
9767