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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_22281917_22282463_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22281917 - 22282463
Intron Length:
547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATACCA
5'SS Class:
major
3'SS Sequence:
TCCTTCTTGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
TTTTCTTCAATA
Flanking Amino Acid:
LLRMAADDVEEYMIERPEPE
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
67.2
38
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
75.3
0.57
0.9
76.6
32
Minor 5ss
32.3
-2
3
40.9
44.8
Minor BPS
74.6
0.77
1.4
83.43
30.9

Associated Gene:

Gene:
PDCD10
Ensembl Gene ID:
ENSAPLG00000013679
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014286
22274937 - 22284703
9767