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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_22282591_22282945_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22282591 - 22282945
Intron Length:
355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CATTGTCAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ACTCTTTTCATT
Flanking Amino Acid:
NDRVRFLQTIKDIASAIKEL
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
81.6
29.9
Major BPS
100
1.24
0.5
100
0
Major PPT
64.5
0.33
1
59
40.7
Minor 5ss
37
-1.5
3.3
50.9
39.6
Minor BPS
49.5
0.05
1.7
66.47
39.2

Associated Gene:

Gene:
PDCD10
Ensembl Gene ID:
ENSAPLG00000013679
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014286
22274937 - 22284703
9767