About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_22283443_22284204_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22283443 - 22284204
Intron Length:
762

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTACCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TTTTTTCTACCA
Flanking Amino Acid:
DTLKTYFKDGKAINVFISAN
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
89.9
22.1
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
87.4
0.84
0.8
82.4
34
Minor 5ss
41
-1
2.8
51.7
39.1
Minor BPS
55.9
0.18
1.9
75.11
36.7

Associated Gene:

Gene:
PDCD10
Ensembl Gene ID:
ENSAPLG00000013679
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014286
22274937 - 22284703
9767