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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_22347278_22347710_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
22347278 - 22347710
Intron Length:
433

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGTGTGTT
5'SS Class:
major
3'SS Sequence:
TTTTACTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTACCTCCATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
74
36.6
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
91
0.92
0.7
89
27.5
Minor 5ss
38.8
-1.3
3.3
48.8
47.3
Minor BPS
56.6
0.29
2
81.05
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021977
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023563
22347144 - 22369308
22165