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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_22349001_22349818_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22349001 - 22349818
Intron Length:
818

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTAACTTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
ATCATTTTAACT
Flanking Amino Acid:
KSGTSVRLKAKTVRELRLEK
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77.9
30
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
77.5
0.62
0.9
70
41.1
Minor 5ss
34.7
-1.7
3.2
41.8
38.8
Minor BPS
68.9
0.67
1.2
78.29
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021977
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023563
22347144 - 22369308
22165