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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_22361690_22361916_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22361690 - 22361916
Intron Length:
227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAATAG
5'SS Class:
major
3'SS Sequence:
TTATATTTCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATCAAATTAATT
Flanking Amino Acid:
DDDDDVNDLTVEEVKRYWTS
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.55
1
63.7
37.1
Major BPS
83
0.82
0.8
82
24.9
Major PPT
77.2
0.61
0.8
72.8
37
Minor 5ss
42.7
-0.8
3
55.2
49
Minor BPS
50.7
0.1
1.8
69.56
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021977
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023563
22347144 - 22369308
22165
ENSAPLT00000020715
22348913 - 22369308
20396