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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_22368480_22369089_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22368480 - 22369089
Intron Length:
610

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TATTTCTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
ATTTCTTTTAAG
Flanking Amino Acid:
LKDQNRDDIPGGCDEGQMGD
Intron Amino Acid Position:
754

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
80.2
30.6
Major BPS
80
0.75
1
78.6
31
Major PPT
79.3
0.66
1
83.7
31.3
Minor 5ss
39.1
-1.2
2.8
40.8
45.4
Minor BPS
58.1
0.11
1.8
66.8
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021977
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023563
22347144 - 22369308
22165
ENSAPLT00000020715
22348913 - 22369308
20396