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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_22385205_22388605_F

Intron Information:

Intron Rank:
139627
Intron Class:
major
Intron Phase:
Intron Coordinates:
22385205 - 22388605
Intron Length:
3401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCTTCATTACTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.4
32.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
83.8
0.76
0.8
77
36.7
Minor 5ss
32
-2.1
3.1
39.6
46.4
Minor BPS
59
0.28
1.9
72.1
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025051
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045853
22385009 - 22389388
4380