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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_2238535_2239851_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2238535 - 2239851
Intron Length:
1317

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
CTGTTTTTACAT
Flanking Amino Acid:
LQLLLDYGCQSSDALLVAID
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
74
36.6
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
84.8
0.78
0.6
85.1
22.4
Minor 5ss
45.8
-0.4
2.6
59.7
45.1
Minor BPS
51
0.11
1.7
67.73
43.8

Associated Gene:

Gene:
TRPC1
Ensembl Gene ID:
ENSAPLG00000002664
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002748
2221401 - 2241659
20259