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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_22388877_22388964_F

Intron Information:

Intron Rank:
139628
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
22388877 - 22388964
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAACAAT
5'SS Class:
weak_major
3'SS Sequence:
GGTGTCTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TCTGCTTTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.8
0.3
1.1
66
39.2
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
66.7
0.38
1.1
60.9
44.7
Minor 5ss
43
-0.8
3.1
63
42.8
Minor BPS
66.6
0.6
1.3
78.01
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025051
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045853
22385009 - 22389388
4380