Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_22390971_22392495_F

Intron Information:

Intron Rank:

139625

Intron Class:

major

Intron Phase:

Intron Coordinates:

22390971 - 22392495

Intron Length:

1525

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTAAGTCTT

5'SS Class:

strong_major

3'SS Sequence:

TTCTCTCCTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAATCAA

U12 Branch Point Sequence:

AGCACATTAACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.6

0.89

0.9

81.8

38.5

Major BPS

62.4

0.31

32.1

Major PPT

0.83

0.6

85.1

22.4

Minor 5ss

39.7

-1.2

3.1

51.1

45.2

Minor BPS

60.7

0.42

1.7

73.62

42.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025051

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028119

22388965 - 22393516

4552