Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_22392732_22393234_F

Intron Information:

Intron Rank:

139623

Intron Class:

major

Intron Phase:

Intron Coordinates:

22392732 - 22393234

Intron Length:

503

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGGGAAGA

5'SS Class:

major

3'SS Sequence:

TCTTCTATTTTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAATTAT

U12 Branch Point Sequence:

TTCTGCTTAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.2

0.64

67.8

39.3

Major BPS

68.1

0.45

58.1

38.5

Major PPT

83.1

0.74

0.7

81.9

28.4

Minor 5ss

-2.8

31.1

42.6

Minor BPS

73.2

0.81

1.7

87.41

38.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025051

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019855

22390438 - 22393516

3079

ENSAPLT00000028119

22388965 - 22393516

4552