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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_22416008_22423166_F

Intron Information:

Intron Rank:
145437
Intron Class:
major
Intron Phase:
Intron Coordinates:
22416008 - 22423166
Intron Length:
7159

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGCACT
5'SS Class:
major
3'SS Sequence:
ATAATCACCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
AAAATATTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
70.8
39.2
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
63.6
0.31
1
55.6
39.2
Minor 5ss
43.9
-0.7
2.9
60.9
38.4
Minor BPS
49.8
-0
1.6
56.86
34.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028408
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045967
22415801 - 22436490
20690
ENSAPLT00000032392
22415801 - 22434035
18235
ENSAPLT00000024705
22415801 - 22428652
12852
ENSAPLT00000019956
22415801 - 22439409
23609