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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_22423364_22424994_F

Intron Information:

Intron Rank:
145438
Intron Class:
major
Intron Phase:
Intron Coordinates:
22423364 - 22424994
Intron Length:
1631

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTGATTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CTTTTTGTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
71.3
34.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
79.6
0.67
1
77.7
40.7
Minor 5ss
28.3
-2.5
3.5
37.3
47.4
Minor BPS
50.2
0.09
2
73.17
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028408
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045967
22415801 - 22436490
20690
ENSAPLT00000032392
22415801 - 22434035
18235
ENSAPLT00000024705
22415801 - 22428652
12852
ENSAPLT00000019956
22415801 - 22439409
23609