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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_22425103_22427652_F

Intron Information:

Intron Rank:
145442
Intron Class:
major
Intron Phase:
Intron Coordinates:
22425103 - 22427652
Intron Length:
2550

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCATTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGATTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
89.1
24.1
Major BPS
100
1.24
0.5
100
0
Major PPT
81.3
0.7
0.8
79.3
33.3
Minor 5ss
41.7
-0.9
2.8
56
41.5
Minor BPS
51.5
0.13
1.7
71.31
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028408
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024705
22415801 - 22428652
12852