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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_22425103_22433611_F

Intron Information:

Intron Rank:
145448
Intron Class:
major
Intron Phase:
Intron Coordinates:
22425103 - 22433611
Intron Length:
8509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTATTTTTAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
89.1
24.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
88.8
0.87
0.6
81.4
30.7
Minor 5ss
41.7
-0.9
2.8
56
41.5
Minor BPS
66.8
0.39
1.4
68.96
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028408
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032392
22415801 - 22434035
18235