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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_22455404_22455516_F

Intron Information:

Intron Rank:
132769
Intron Class:
major
Intron Phase:
Intron Coordinates:
22455404 - 22455516
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTCCATTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
GATTCTATATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
81.4
0.71
0.8
75
33
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
50.5
0.1
1.8
70.84
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021374
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042514
22455393 - 22457624
2232