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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_22455699_22457568_F

Intron Information:

Intron Rank:
132770
Intron Class:
major
Intron Phase:
Intron Coordinates:
22455699 - 22457568
Intron Length:
1870

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGTTATA
5'SS Class:
major
3'SS Sequence:
TCTCTTGGTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TAATGTTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.5
0.39
1.2
72
39.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
71.7
0.49
1
65.1
41.2
Minor 5ss
34.3
-1.8
2.9
43.1
43.8
Minor BPS
53.6
0.19
2
73.76
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021374
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042514
22455393 - 22457624
2232