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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_2246779_2248168_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2246779 - 2248168
Intron Length:
1390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTATTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTCCTTATTA
Flanking Amino Acid:
TLALIWQLMRRYTLNVLSDL
Intron Amino Acid Position:
503

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84
30.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
74
0.54
1
74.9
32.4
Minor 5ss
39.5
-1.2
2.8
48.7
47.5
Minor BPS
78.9
0.9
1.4
87.27
31.2

Associated Gene:

Gene:
PLS1
Ensembl Gene ID:
ENSAPLG00000003150
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003268
2243892 - 2265688
21797