About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_2249567_2254635_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2249567 - 2254635
Intron Length:
5069

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTCAAC
5'SS Class:
major
3'SS Sequence:
TTTGTCACTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTATATAGAATT
Flanking Amino Acid:
NSSYDLNLLEGESNEERTFR
Intron Amino Acid Position:
394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
65.3
40.7
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
76.7
0.6
0.8
70.8
34.8
Minor 5ss
38.7
-1.3
3.1
51.8
45
Minor BPS
48.5
-0
1.8
71.94
38.7

Associated Gene:

Gene:
PLS1
Ensembl Gene ID:
ENSAPLG00000003150
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003268
2243892 - 2265688
21797