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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_2254832_2256084_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2254832 - 2256084
Intron Length:
1253

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CACAATTTAATA
Flanking Amino Acid:
PVKIDFSGFHEKNDLKRAEY
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
87.3
27
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
96.8
1.05
0.5
96.1
13.2
Minor 5ss
42.7
-0.8
2.8
59.4
38.1
Minor BPS
49.4
-0
1.5
53.7
39.1

Associated Gene:

Gene:
PLS1
Ensembl Gene ID:
ENSAPLG00000003150
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003268
2243892 - 2265688
21797