Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_22557936_22560146_F

Intron Information:

Intron Rank:

129991

Intron Class:

major

Intron Phase:

Intron Coordinates:

22557936 - 22560146

Intron Length:

2211

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGTGCA

5'SS Class:

strong_major

3'SS Sequence:

TTCTTTCTCATAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAATAAA

U12 Branch Point Sequence:

TCTTTCTCATAG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.3

0.83

0.9

77.9

Major BPS

70.8

0.52

70.6

31.6

Major PPT

83.5

0.75

0.7

80.1

25.5

Minor 5ss

34.7

-1.7

3.2

41.8

38.8

Minor BPS

47.4

-0.3

1.9

56.29

45.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019957

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021469

22555086 - 22560511

5426

ENSAPLT00000042354

22557737 - 22560511

2775