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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_2256181_2257696_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2256181 - 2257696
Intron Length:
1516

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTAGT
5'SS Class:
strong_major
3'SS Sequence:
CTGTGTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTTATT
Flanking Amino Acid:
KISNFSQDIKDSRAYYHLLN
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
83.5
35.1
Major BPS
100
1.24
0.5
100
0
Major PPT
71.9
0.49
1
69.2
41.8
Minor 5ss
43.5
-0.7
2.6
60.2
44.3
Minor BPS
67.6
0.63
1.9
89.45
34.7

Associated Gene:

Gene:
PLS1
Ensembl Gene ID:
ENSAPLG00000003150
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003268
2243892 - 2265688
21797