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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_22571350_22582429_F

Intron Information:

Intron Rank:
125076
Intron Class:
major
Intron Phase:
Intron Coordinates:
22571350 - 22582429
Intron Length:
11080

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAGTAC
U12 Branch Point Sequence:
GTTGGATTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
74.5
41.9
Major BPS
49.9
-0
1.4
51.8
43.6
Major PPT
85.1
0.79
0.7
84.2
23.8
Minor 5ss
41.2
-1
2.9
54.6
44.5
Minor BPS
45.9
-0.2
2.3
69.72
46.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017358
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025806
22570972 - 22583302
12331