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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_2257840_2257939_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2257840 - 2257939
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
AACTTCTTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAA
U12 Branch Point Sequence:
TTTCTTTCAAAC
Flanking Amino Acid:
FADIEISRNEALIALLNEGE
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.5
1.12
0.6
90.6
20.3
Major BPS
78.4
0.71
0.9
81.3
29.8
Major PPT
76.6
0.6
0.8
74.1
35.7
Minor 5ss
36.3
-1.6
3.3
49
47.2
Minor BPS
55.4
0.15
1.6
69.06
36

Associated Gene:

Gene:
PLS1
Ensembl Gene ID:
ENSAPLG00000003150
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003268
2243892 - 2265688
21797