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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_2259496_2260954_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2259496 - 2260954
Intron Length:
1459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCCTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
TTTGAATAAACT
Flanking Amino Acid:
FKCLADGILLCKMINFSQPD
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
72
34.7
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
85.2
0.79
0.6
85.4
21.9
Minor 5ss
28.2
-2.5
2.7
28.9
37.2
Minor BPS
49.5
0.04
2.2
78.09
43.9

Associated Gene:

Gene:
PLS1
Ensembl Gene ID:
ENSAPLG00000003150
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003268
2243892 - 2265688
21797