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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_22598313_22611044_F

Intron Information:

Intron Rank:
125075
Intron Class:
major
Intron Phase:
Intron Coordinates:
22598313 - 22611044
Intron Length:
12732

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATAA
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTATTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTAATTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
79.1
24.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.4
0.82
0.8
85.6
33.6
Minor 5ss
31.8
-2.1
3
37.8
47
Minor BPS
66.3
0.59
1.7
85
34.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017358
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019730
22570972 - 22611565
40594
ENSAPLT00000029230
22577337 - 22611565
34229