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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_2261601_2262699_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2261601 - 2262699
Intron Length:
1099

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGACAT
5'SS Class:
major
3'SS Sequence:
TATCTGATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
GTATAATTAATC
Flanking Amino Acid:
GRINFEEFVSIIQELKSKDV
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.1
65
40.8
Major BPS
83
0.82
0.8
82
24.9
Major PPT
77
0.61
0.9
70.3
39.7
Minor 5ss
36.5
-1.5
3.3
58.3
45.6
Minor BPS
55.9
0.17
1.8
66.77
38.1

Associated Gene:

Gene:
PLS1
Ensembl Gene ID:
ENSAPLG00000003150
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003268
2243892 - 2265688
21797