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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_2262864_2265618_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2262864 - 2265618
Intron Length:
2755

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAA
U12 Branch Point Sequence:
TTAAGTATAAAA
Flanking Amino Acid:
DELREAFDKIDIDNSGYVSD
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
89.6
24.2
Major BPS
65.3
0.38
1
71.6
30.1
Major PPT
89.9
0.9
0.7
84.7
30.1
Minor 5ss
57.8
0.27
2.3
75.5
40.6
Minor BPS
44.8
-0.3
2
59.33
39.9

Associated Gene:

Gene:
PLS1
Ensembl Gene ID:
ENSAPLG00000003150
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003268
2243892 - 2265688
21797