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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_22706368_22728297_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22706368 - 22728297
Intron Length:
21930

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCATTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTTTTTCATTT
Flanking Amino Acid:
LRYWASFAKTGNPNGTLING
Intron Amino Acid Position:
529

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.9
84.1
30.2
Major BPS
100
1.24
0.5
100
0
Major PPT
82.3
0.73
0.8
82
28.8
Minor 5ss
43.3
-0.7
2.8
49.9
46.4
Minor BPS
50.8
0.1
1.8
70.88
41.3

Associated Gene:

Gene:
BCHE
Ensembl Gene ID:
ENSAPLG00000012607
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013135
22662186 - 22734711
72526
ENSAPLT00000044840
22701142 - 22734754
33613
ENSAPLT00000044375
22679870 - 22734711
54842
ENSAPLT00000036443
22679870 - 22730769
50900