About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_22730770_22734583_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
22730770 - 22734583
Intron Length:
3814

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGAC
5'SS Class:
major
3'SS Sequence:
TCATGTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTAGTGTAACC
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
69.9
34.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
81.8
0.72
0.9
75.7
38
Minor 5ss
35.2
-1.7
3.3
49.1
41.3
Minor BPS
47
-0.2
2.3
64.99
40.9

Associated Gene:

Gene:
BCHE
Ensembl Gene ID:
ENSAPLG00000012607
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044840
22701142 - 22734754
33613