About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_22845693_22850105_R

Intron Information:

Intron Rank:
147904
Intron Class:
major
Intron Phase:
Intron Coordinates:
22845693 - 22850105
Intron Length:
4413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGACT
5'SS Class:
major
3'SS Sequence:
TTCTTGCTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTCTCTTTACAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
69.4
41.1
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
81.3
0.7
0.8
75.8
32.9
Minor 5ss
32.9
-2
3.5
49
47
Minor BPS
60.5
0.31
1.7
70.99
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026856
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044450
22845463 - 22859408
13946