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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_22850205_22858777_R

Intron Information:

Intron Rank:
147905
Intron Class:
major
Intron Phase:
Intron Coordinates:
22850205 - 22858777
Intron Length:
8573

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGGGG
5'SS Class:
major
3'SS Sequence:
CTTCTCCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAC
U12 Branch Point Sequence:
TTCTCCCCACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.2
58.7
46.2
Major BPS
67.3
0.43
1.2
71.3
36.7
Major PPT
78.7
0.65
0.7
72.6
25.7
Minor 5ss
34.2
-1.8
3.6
46.8
48.5
Minor BPS
42.9
-0.6
2.2
53.67
46.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026856
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044450
22845463 - 22859408
13946