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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_22923907_22924671_F

Intron Information:

Intron Rank:
135742
Intron Class:
major
Intron Phase:
Intron Coordinates:
22923907 - 22924671
Intron Length:
765

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTTATTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
86.2
29.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
87.9
0.85
0.8
86
32.7
Minor 5ss
38.5
-1.3
2.8
49.8
40.3
Minor BPS
54.8
0.23
1.6
71.35
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023084
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020259
22914458 - 22925746
11289
ENSAPLT00000028534
22922252 - 22925746
3495
ENSAPLT00000027100
22919670 - 22925746
6077