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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_22954813_22988701_R

Intron Information:

Intron Rank:
131416
Intron Class:
major
Intron Phase:
Intron Coordinates:
22954813 - 22988701
Intron Length:
33889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTCAGCATT
5'SS Class:
major
3'SS Sequence:
CTTTACTTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTATTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.3
74.5
41.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
74.9
0.56
1
75.4
33
Minor 5ss
40.9
-1
3
55.5
42.8
Minor BPS
64.5
0.45
1.7
76.25
33.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017905
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039625
22954448 - 22992650
38203