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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_23002092_23004956_R

Intron Information:

Intron Rank:
144242
Intron Class:
major
Intron Phase:
Intron Coordinates:
23002092 - 23004956
Intron Length:
2865

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
TTATGTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTTTTTATGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80.8
0.69
0.9
73.7
41.5
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
56.7
0.29
1.9
77.22
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024863
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028042
23001086 - 23005159
4074