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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_23005160_23008824_R

Intron Information:

Intron Rank:
144244
Intron Class:
major
Intron Phase:
Intron Coordinates:
23005160 - 23008824
Intron Length:
3665

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTATTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTGTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
80.7
33.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.7
0.76
0.8
82.1
34.6
Minor 5ss
35.6
-1.6
2.8
42.7
38.3
Minor BPS
59.9
0.39
1.6
78.46
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024863
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029241
23004369 - 23008960
4592