About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_23168106_23176947_R

Intron Information:

Intron Rank:
136782
Intron Class:
major
Intron Phase:
Intron Coordinates:
23168106 - 23176947
Intron Length:
8842

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTTAT
U12 Branch Point Sequence:
TGCTAAGGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.5
36.8
Major BPS
64.7
0.37
1.2
55.4
41.7
Major PPT
85.1
0.79
0.8
77
37.3
Minor 5ss
38.5
-1.3
3.4
55.9
48.3
Minor BPS
38
-0.8
2.3
57.47
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021081
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026635
23161419 - 23177563
16145