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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_23190393_23193081_R

Intron Information:

Intron Rank:
129368
Intron Class:
major
Intron Phase:
Intron Coordinates:
23190393 - 23193081
Intron Length:
2689

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTATCAGCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATCAGCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.7
82.7
36.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
71.3
0.48
1
65.8
39.6
Minor 5ss
27.5
-2.6
3.9
40.4
45.7
Minor BPS
50.9
0.02
2
72.76
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016811
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030951
23189103 - 23201765
12663